PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79152.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family E2F/DP
Protein Properties Length: 226aa    MW: 25248.9 Da    PI: 7.2146
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79152.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP52.48.4e-1722573771
       E2F_TDP 37 e..dvknkrRRiYDilNVLealnliekkekneirwkg 71
                  +  d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  MLOC_79152.2 22 QqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 57
                  14589**********************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013723.7E-7457IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-121558IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.1E-141857IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.4E-231963IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.78E-4162165IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.15E-4164174No hitNo description
SMARTSM011383.2E-7564224IPR014889Transcription factor DP, C-terminal
PfamPF087811.5E-4165196IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAIPSGQLFV MCNVLIVYKI QQQYDEKNIR RRVYDALNVL MAMDIISKDK KEIQWKGLPR  60
TSLSDIDKLK TELIGLKGRI DKKSAYLQEL QDQYVGLQNL VERNEQLYGS GDAPSGGVAL  120
PFILVQTRPH ATVEVEISED MQLVHFDFNS TPFELHDDSF VLKAMGFSGK EETDGTVALV  180
ANAVECSSAS NVHGHRSPQP ARPNGTRLRT PPPIPGILKG RVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-1524625593PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727520.0AK372752.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573972.11e-132PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY26e-90DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM0Z8R71e-169M0Z8R7_HORVD; Uncharacterized protein
STRINGMLOC_79152.21e-169(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.23e-91Transcription factor DP